J3_9B4Z_009
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9B4Z|1|AA|A|975, 9B4Z|1|AA|G|976, 9B4Z|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B4Z_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0529
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B4Z|1|AA|U|955
9B4Z|1|AA|U|956
9B4Z|1|AA|U|957
9B4Z|1|AA|A|958
9B4Z|1|AA|A|959
9B4Z|1|AA|U|960
9B4Z|1|AA|U|961
9B4Z|1|AA|C|962
*
9B4Z|1|AA|G|973
9B4Z|1|AA|A|974
9B4Z|1|AA|A|975
9B4Z|1|AA|G|976
9B4Z|1|AA|A|977
9B4Z|1|AA|A|978
9B4Z|1|AA|C|979
9B4Z|1|AA|C|980
9B4Z|1|AA|U|981
9B4Z|1|AA|U|982
9B4Z|1|AA|A|983
9B4Z|1|AA|C|984
*
9B4Z|1|AA|G|1221
9B4Z|1|AA|G|1222
9B4Z|1|AA|C|1223
9B4Z|1|AA|U|1224
9B4Z|1|AA|A|1225
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14
- Chain AS
- 30S ribosomal protein S19
- Chain AW
- Transfer RNA; tRNA
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