J3_9B4Z_019

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9B4Z|1|BA|A|504, 9B4Z|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_019 not in the Motif Atlas

Geometric match to J3_8B0X_032

Geometric discrepancy: 0.0366

The information below is about J3_8B0X_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9B4Z|1|BA|G|30
9B4Z|1|BA|C|31
*
9B4Z|1|BA|G|474
9B4Z|1|BA|C|475
9B4Z|1|BA|G|476
9B4Z|1|BA|A|477
9B4Z|1|BA|A|478
9B4Z|1|BA|A|479
9B4Z|1|BA|A|480
9B4Z|1|BA|G|481
9B4Z|1|BA|A|482
9B4Z|1|BA|A|483
9B4Z|1|BA|C|484
*
9B4Z|1|BA|G|496
9B4Z|1|BA|A|497
9B4Z|1|BA|G|498
9B4Z|1|BA|U|499
9B4Z|1|BA|G|500
9B4Z|1|BA|A|501
9B4Z|1|BA|A|502
9B4Z|1|BA|A|503
9B4Z|1|BA|A|504
9B4Z|1|BA|A|505
9B4Z|1|BA|G|506
9B4Z|1|BA|A|507
9B4Z|1|BA|A|508
9B4Z|1|BA|C|509
9B4Z|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24