J3_9B4Z_020
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9B4Z|1|BA|U|34, 9B4Z|1|BA|U|448, 9B4Z|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B4Z_020 not in the Motif Atlas
- Geometric match to J3_8B0X_033
- Geometric discrepancy: 0.0344
- The information below is about J3_8B0X_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9B4Z|1|BA|C|32
9B4Z|1|BA|C|33
9B4Z|1|BA|U|34
9B4Z|1|BA|G|35
*
9B4Z|1|BA|C|445
9B4Z|1|BA|G|446
9B4Z|1|BA|A|447
9B4Z|1|BA|U|448
9B4Z|1|BA|A|449
9B4Z|1|BA|G|450
9B4Z|1|BA|U|451
9B4Z|1|BA|G|452
9B4Z|1|BA|A|453
9B4Z|1|BA|A|454
9B4Z|1|BA|C|455
9B4Z|1|BA|C|456
9B4Z|1|BA|A|457
9B4Z|1|BA|G|458
9B4Z|1|BA|U|459
9B4Z|1|BA|A|460
9B4Z|1|BA|C|461
*
9B4Z|1|BA|G|468
9B4Z|1|BA|G|469
9B4Z|1|BA|A|470
9B4Z|1|BA|A|471
9B4Z|1|BA|A|472
9B4Z|1|BA|G|473
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BE
- 50S ribosomal protein L4
- Chain BQ
- 50S ribosomal protein L20
- Chain BT
- 50S ribosomal protein L23
Coloring options: