J3_9B4Z_032
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9B4Z|1|BA|A|2388, 9B4Z|1|BA|U|2390, 9B4Z|1|BA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B4Z_032 not in the Motif Atlas
- Geometric match to J3_8B0X_036
- Geometric discrepancy: 0.0426
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9B4Z|1|BA|G|2282
9B4Z|1|BA|C|2283
9B4Z|1|BA|A|2284
*
9B4Z|1|BA|U|2384
9B4Z|1|BA|C|2385
9B4Z|1|BA|A|2386
9B4Z|1|BA|U|2387
9B4Z|1|BA|A|2388
9B4Z|1|BA|G|2389
9B4Z|1|BA|U|2390
9B4Z|1|BA|G|2391
9B4Z|1|BA|A|2392
9B4Z|1|BA|U|2393
9B4Z|1|BA|C|2394
9B4Z|1|BA|C|2395
*
9B4Z|1|BA|G|2421
9B4Z|1|BA|C|2422
9B4Z|1|BA|U|2423
9B4Z|1|BA|C|2424
9B4Z|1|BA|A|2425
9B4Z|1|BA|A|2426
9B4Z|1|BA|C|2427
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
Coloring options: