J3_9B4Z_037

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

9B4Z|1|BB|U|14, 9B4Z|1|BB|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BB|G|10
9B4Z|1|BB|C|11
9B4Z|1|BB|C|12
9B4Z|1|BB|G|13
9B4Z|1|BB|U|14
9B4Z|1|BB|A|15
9B4Z|1|BB|G|16
*
9B4Z|1|BB|C|68
9B4Z|1|BB|G|69
9B4Z|1|BB|C|70
*
9B4Z|1|BB|G|106
9B4Z|1|BB|G|107
9B4Z|1|BB|A|108
9B4Z|1|BB|A|109
9B4Z|1|BB|C|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L18

Chain BV

50S ribosomal protein L25

Chain BW

50S ribosomal protein L27