J3_9BDL_002
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9BDL|1|A18S|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDL_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0981
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BDL|1|A18S|A|938
9BDL|1|A18S|U|939
9BDL|1|A18S|U|940
9BDL|1|A18S|C|941
*
9BDL|1|A18S|G|985
9BDL|1|A18S|G|986
9BDL|1|A18S|A|987
9BDL|1|A18S|C|988
9BDL|1|A18S|C|989
9BDL|1|A18S|A|990
9BDL|1|A18S|G|991
9BDL|1|A18S|A|992
9BDL|1|A18S|G|993
*
9BDL|1|A18S|C|1000
9BDL|1|A18S|A|1001
9BDL|1|A18S|U|1002
9BDL|1|A18S|U|1003
9BDL|1|A18S|U|1004
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS01
- 40S ribosomal protein S3a
- Chain AS13
- 40S ribosomal protein S13
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain AS26
- eS26
Coloring options: