J3_9BDL_012

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUCC*GCCGG*CCACGCGUCCAG

Length

22 nucleotides

Bulged bases

9BDL|1|A28S|C|1237

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|U|980
9BDL|1|A28S|C|981
9BDL|1|A28S|U|982
9BDL|1|A28S|C|983
9BDL|1|A28S|C|984
*
9BDL|1|A28S|G|1070
9BDL|1|A28S|C|1071
9BDL|1|A28S|C|1072
9BDL|1|A28S|G|1073
9BDL|1|A28S|G|1074
*
9BDL|1|A28S|C|1236
9BDL|1|A28S|C|1237
9BDL|1|A28S|A|1238
9BDL|1|A28S|C|1239
9BDL|1|A28S|G|1244
9BDL|1|A28S|C|1245
9BDL|1|A28S|G|1246
9BDL|1|A28S|U|1247
9BDL|1|A28S|C|1248
9BDL|1|A28S|C|1249
9BDL|1|A28S|A|1274
9BDL|1|A28S|G|1275

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7

Chain AL29

Large ribosomal subunit protein eL29