J3_9BDL_020

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

9BDL|1|A28S|C|4116, 9BDL|1|A28S|U|4117, 9BDL|1|A28S|U|4118, 9BDL|1|A28S|C|4119, 9BDL|1|A28S|U|4120, 9BDL|1|A28S|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_020 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.2413

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9BDL|1|A28S|G|4091
9BDL|1|A28S|G|4092
9BDL|1|A28S|G|4093
9BDL|1|A28S|G|4094
*
9BDL|1|A28S|C|4114
9BDL|1|A28S|G|4115
9BDL|1|A28S|C|4116
9BDL|1|A28S|U|4117
9BDL|1|A28S|U|4118
9BDL|1|A28S|C|4119
9BDL|1|A28S|U|4120
9BDL|1|A28S|G|4121
9BDL|1|A28S|G|4122
9BDL|1|A28S|C|4123
9BDL|1|A28S|G|4124
9BDL|1|A28S|C|4125
9BDL|1|A28S|C|4126
9BDL|1|A28S|A|4127
9BDL|1|A28S|A|4128
9BDL|1|A28S|G|4129
*
9BDL|1|A28S|C|4155
9BDL|1|A28S|G|4156
9BDL|1|A28S|A|4157
9BDL|1|A28S|C|4158

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL27

60S ribosomal protein L27

Chain AL30

60S ribosomal protein L30

Chain AL34

60S ribosomal protein L34

Chain AL43

60S ribosomal protein L37a