J3_9BDL_040

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

9BDL|1|A28S|U|4882, 9BDL|1|A28S|A|4938, 9BDL|1|A28S|C|4940, 9BDL|1|A28S|A|4943, 9BDL|1|A28S|C|4944, 9BDL|1|A28S|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|4749
9BDL|1|A28S|G|4750
9BDL|1|A28S|G|4751
9BDL|1|A28S|U|4752
9BDL|1|A28S|U|4753
9BDL|1|A28S|G|4754
*
9BDL|1|A28S|C|4879
9BDL|1|A28S|C|4880
9BDL|1|A28S|U|4881
9BDL|1|A28S|U|4882
9BDL|1|A28S|C|4883
*
9BDL|1|A28S|G|4936
9BDL|1|A28S|C|4937
9BDL|1|A28S|A|4938
9BDL|1|A28S|C|4939
9BDL|1|A28S|C|4940
9BDL|1|A28S|G|4941
9BDL|1|A28S|C|4942
9BDL|1|A28S|A|4943
9BDL|1|A28S|C|4944
9BDL|1|A28S|G|4945
9BDL|1|A28S|U|4946
9BDL|1|A28S|U|4947
9BDL|1|A28S|C|4948
9BDL|1|A28S|G|4949
9BDL|1|A28S|U|4950
9BDL|1|A28S|G|4951

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL14

Large ribosomal subunit protein eL14

Chain AL16

Large ribosomal subunit protein uL13

Chain AL33

60S ribosomal protein L35a