J3_9BDN_001

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1781

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

9BDN|1|A18S|A|816
9BDN|1|A18S|G|817
9BDN|1|A18S|A|818
9BDN|1|A18S|G|819
*
9BDN|1|A18S|C|829
9BDN|1|A18S|A|830
9BDN|1|A18S|G|831
*
9BDN|1|A18S|C|843
9BDN|1|A18S|U|844
9BDN|1|A18S|G|845
9BDN|1|A18S|G|846
9BDN|1|A18S|A|847
9BDN|1|A18S|U|848

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24