J3_9BDN_006
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9BDN|1|A18S|G|1256, 9BDN|1|A18S|A|1258, 9BDN|1|A18S|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0813
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9BDN|1|A18S|C|1237
9BDN|1|A18S|U|1238
9BDN|1|A18S|U|1239
9BDN|1|A18S|A|1240
9BDN|1|A18S|A|1241
9BDN|1|A18S|U|1242
9BDN|1|A18S|U|1243
9BDN|1|A18S|U|1244
*
9BDN|1|A18S|G|1255
9BDN|1|A18S|G|1256
9BDN|1|A18S|G|1257
9BDN|1|A18S|A|1258
9BDN|1|A18S|A|1259
9BDN|1|A18S|A|1260
9BDN|1|A18S|C|1261
9BDN|1|A18S|C|1262
9BDN|1|A18S|U|1263
9BDN|1|A18S|C|1264
9BDN|1|A18S|A|1265
9BDN|1|A18S|C|1266
*
9BDN|1|A18S|G|1516
9BDN|1|A18S|G|1517
9BDN|1|A18S|C|1518
9BDN|1|A18S|U|1519
9BDN|1|A18S|G|1520
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ANG
- Angiogenin
- Chain AS15
- 40S ribosomal protein S15
- Chain AS18
- 40S ribosomal protein S18
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
Coloring options: