J3_9BDN_022

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

9BDN|1|A5S|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A5S|C|9
9BDN|1|A5S|C|10
9BDN|1|A5S|A|11
9BDN|1|A5S|U|12
9BDN|1|A5S|A|13
9BDN|1|A5S|C|14
*
9BDN|1|A5S|G|65
9BDN|1|A5S|G|66
9BDN|1|A5S|C|67
*
9BDN|1|A5S|G|108
9BDN|1|A5S|U|109
9BDN|1|A5S|G|110

Current chains

Chain A5S

5S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21