J3_9BDN_030

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9BDN|1|A28S|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|451
9BDN|1|A28S|A|452
9BDN|1|A28S|G|453
9BDN|1|A28S|U|454
9BDN|1|A28S|C|455
*
9BDN|1|A28S|G|701
9BDN|1|A28S|U|702
9BDN|1|A28S|G|703
9BDN|1|A28S|C|704
9BDN|1|A28S|G|705
*
9BDN|1|A28S|C|1292
9BDN|1|A28S|G|1293
9BDN|1|A28S|A|1294
9BDN|1|A28S|U|1295
9BDN|1|A28S|G|1296

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a

Chain ALNW

60S ribosomal protein L28