J3_9BDN_036

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

9BDN|1|A28S|U|4882, 9BDN|1|A28S|A|4938, 9BDN|1|A28S|C|4940, 9BDN|1|A28S|A|4943, 9BDN|1|A28S|C|4944, 9BDN|1|A28S|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|4749
9BDN|1|A28S|G|4750
9BDN|1|A28S|G|4751
9BDN|1|A28S|U|4752
9BDN|1|A28S|U|4753
9BDN|1|A28S|G|4754
*
9BDN|1|A28S|C|4879
9BDN|1|A28S|C|4880
9BDN|1|A28S|U|4881
9BDN|1|A28S|U|4882
9BDN|1|A28S|C|4883
*
9BDN|1|A28S|G|4936
9BDN|1|A28S|C|4937
9BDN|1|A28S|A|4938
9BDN|1|A28S|C|4939
9BDN|1|A28S|C|4940
9BDN|1|A28S|G|4941
9BDN|1|A28S|C|4942
9BDN|1|A28S|A|4943
9BDN|1|A28S|C|4944
9BDN|1|A28S|G|4945
9BDN|1|A28S|U|4946
9BDN|1|A28S|U|4947
9BDN|1|A28S|C|4948
9BDN|1|A28S|G|4949
9BDN|1|A28S|U|4950
9BDN|1|A28S|G|4951

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL14

60S ribosomal protein L14

Chain AL16

Large ribosomal subunit protein uL13

Chain AL33

60S ribosomal protein L35a