J3_9BDP_006

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

9BDP|1|A18S|G|1274, 9BDP|1|A18S|G|1507, 9BDP|1|A18S|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A18S|C|1273
9BDP|1|A18S|G|1274
9BDP|1|A18S|G|1275
9BDP|1|A18S|A|1276
9BDP|1|A18S|C|1277
*
9BDP|1|A18S|G|1320
9BDP|1|A18S|G|1321
9BDP|1|A18S|G|1322
9BDP|1|A18S|U|1323
9BDP|1|A18S|G|1324
*
9BDP|1|A18S|U|1504
9BDP|1|A18S|U|1505
9BDP|1|A18S|A|1506
9BDP|1|A18S|G|1507
9BDP|1|A18S|A|1508
9BDP|1|A18S|U|1509
9BDP|1|A18S|G|1510

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29