J3_9BDP_033

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGCAGUC*GUGCG*CGAUGUC

Length

20 nucleotides

Bulged bases

9BDP|1|A28S|C|449, 9BDP|1|A28S|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A28S|G|448
9BDP|1|A28S|C|449
9BDP|1|A28S|G|450
9BDP|1|A28S|C|451
9BDP|1|A28S|A|452
9BDP|1|A28S|G|453
9BDP|1|A28S|U|454
9BDP|1|A28S|C|455
*
9BDP|1|A28S|G|701
9BDP|1|A28S|U|702
9BDP|1|A28S|G|703
9BDP|1|A28S|C|704
9BDP|1|A28S|G|705
*
9BDP|1|A28S|C|1292
9BDP|1|A28S|G|1293
9BDP|1|A28S|A|1294
9BDP|1|A28S|U|1295
9BDP|1|A28S|G|1296
9BDP|1|A28S|U|1297
9BDP|1|A28S|C|1298

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a

Chain ALNW

60S ribosomal protein L28