J3_9BDP_040

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

9BDP|1|A28S|U|4882, 9BDP|1|A28S|A|4938, 9BDP|1|A28S|C|4940, 9BDP|1|A28S|A|4943, 9BDP|1|A28S|C|4944, 9BDP|1|A28S|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDP|1|A28S|C|4749
9BDP|1|A28S|G|4750
9BDP|1|A28S|G|4751
9BDP|1|A28S|U|4752
9BDP|1|A28S|U|4753
9BDP|1|A28S|G|4754
*
9BDP|1|A28S|C|4879
9BDP|1|A28S|C|4880
9BDP|1|A28S|U|4881
9BDP|1|A28S|U|4882
9BDP|1|A28S|C|4883
9BDP|1|A28S|G|4884
*
9BDP|1|A28S|C|4935
9BDP|1|A28S|G|4936
9BDP|1|A28S|C|4937
9BDP|1|A28S|A|4938
9BDP|1|A28S|C|4939
9BDP|1|A28S|C|4940
9BDP|1|A28S|G|4941
9BDP|1|A28S|C|4942
9BDP|1|A28S|A|4943
9BDP|1|A28S|C|4944
9BDP|1|A28S|G|4945
9BDP|1|A28S|U|4946
9BDP|1|A28S|U|4947
9BDP|1|A28S|C|4948
9BDP|1|A28S|G|4949
9BDP|1|A28S|U|4950
9BDP|1|A28S|G|4951

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL14

60S ribosomal protein L14

Chain AL16

Large ribosomal subunit protein uL13

Chain AL33

60S ribosomal protein L35a