J3_9BKD_001
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUCUUUU*AUGGAAUAGG*CAUGAU
- Length
- 23 nucleotides
- Bulged bases
- 9BKD|1|A|A|913
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BKD|1|A|A|685
9BKD|1|A|U|686
9BKD|1|A|C|687
9BKD|1|A|U|688
9BKD|1|A|U|689
9BKD|1|A|U|799
9BKD|1|A|U|800
*
9BKD|1|A|A|865
9BKD|1|A|U|866
9BKD|1|A|G|867
9BKD|1|A|G|868
9BKD|1|A|A|869
9BKD|1|A|A|870
9BKD|1|A|U|871
9BKD|1|A|A|872
9BKD|1|A|G|873
9BKD|1|A|G|874
*
9BKD|1|A|C|912
9BKD|1|A|A|913
9BKD|1|A|U|914
9BKD|1|A|G|915
9BKD|1|A|A|916
9BKD|1|A|U|917
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain G
- Small ribosomal subunit protein eS7
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
Coloring options: