J3_9BKD_003
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9BKD|1|A|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0894
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BKD|1|A|A|938
9BKD|1|A|U|939
9BKD|1|A|U|940
9BKD|1|A|C|941
*
9BKD|1|A|G|985
9BKD|1|A|G|986
9BKD|1|A|A|987
9BKD|1|A|C|988
9BKD|1|A|C|989
9BKD|1|A|A|990
9BKD|1|A|G|991
9BKD|1|A|A|992
9BKD|1|A|G|993
*
9BKD|1|A|C|1000
9BKD|1|A|A|1001
9BKD|1|A|U|1002
9BKD|1|A|U|1003
9BKD|1|A|U|1004
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S3a
- Chain P
- 40S ribosomal protein S14
- Chain Q
- 40S ribosomal protein S26
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