J3_9BKD_014
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- U(OMG)GA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 9BKD|1|A|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BKD|1|A|U|682
9BKD|1|A|OMG|683
9BKD|1|A|G|684
9BKD|1|A|A|685
*
9BKD|1|A|U|917
9BKD|1|A|U|918
9BKD|1|A|A|919
9BKD|1|A|A|920
9BKD|1|A|G|921
9BKD|1|A|A|922
*
9BKD|1|A|U|1022
9BKD|1|A|A|1023
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain G
- Small ribosomal subunit protein eS7
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
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