J3_9BLN_002
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BLN_002 not in the Motif Atlas
- Homologous match to J3_8P9A_073
- Geometric discrepancy: 0.1946
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.2
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BLN|1|A|A|816
9BLN|1|A|G|817
9BLN|1|A|A|818
9BLN|1|A|G|819
*
9BLN|1|A|C|829
9BLN|1|A|A|830
9BLN|1|A|G|831
*
9BLN|1|A|C|843
9BLN|1|A|U|844
9BLN|1|A|G|845
9BLN|1|A|G|846
9BLN|1|A|A|847
9BLN|1|A|U|848
Current chains
- Chain A
- rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain D
- Small ribosomal subunit protein uS4
- Chain T
- Small ribosomal subunit protein eS24
Coloring options: