J3_9BLN_007
3D structure
- PDB id
- 9BLN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9BLN|1|A|G|1256, 9BLN|1|A|A|1258
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BLN_007 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0623
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9BLN|1|A|C|1237
9BLN|1|A|U|1238
9BLN|1|A|U|1239
9BLN|1|A|A|1240
9BLN|1|A|A|1241
9BLN|1|A|U|1242
9BLN|1|A|PSU|1243
9BLN|1|A|U|1244
*
9BLN|1|A|G|1255
9BLN|1|A|G|1256
9BLN|1|A|G|1257
9BLN|1|A|A|1258
9BLN|1|A|A|1259
9BLN|1|A|A|1260
9BLN|1|A|C|1261
9BLN|1|A|C|1262
9BLN|1|A|U|1263
9BLN|1|A|C|1264
9BLN|1|A|A|1265
9BLN|1|A|C|1266
*
9BLN|1|A|G|1516
9BLN|1|A|G|1517
9BLN|1|A|C|1518
9BLN|1|A|U|1519
9BLN|1|A|G|1520
Current chains
- Chain A
- rRNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS19
- Chain f
- Small ribosomal subunit protein uS13
- Chain h
- Small ribosomal subunit protein uS10
- Chain i
- Small ribosomal subunit protein uS14
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