J3_9BS0_004

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAC*GGGUUGUAG*CUG

Length

17 nucleotides

Bulged bases

9BS0|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_004 not in the Motif Atlas

Homologous match to J3_4WF9_014

Geometric discrepancy: 0.2921

The information below is about J3_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BS0|1|A|C|272
9BS0|1|A|A|273
9BS0|1|A|A|274
9BS0|1|A|A|275
9BS0|1|A|C|276
*
9BS0|1|A|G|295
9BS0|1|A|G|296
9BS0|1|A|G|297
9BS0|1|A|U|298
9BS0|1|A|U|299
9BS0|1|A|G|300
9BS0|1|A|U|301
9BS0|1|A|A|302
9BS0|1|A|G|303
*
9BS0|1|A|C|415
9BS0|1|A|U|416
9BS0|1|A|G|417

Current chains

Chain A

23S rRNA

Nearby chains