J3_9BS0_011

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

9BS0|1|A|A|2227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BS0_011 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.2351

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9BS0|1|A|U|2120
9BS0|1|A|U|2121
9BS0|1|A|G|2122
*
9BS0|1|A|C|2225
9BS0|1|A|U|2226
9BS0|1|A|A|2227
9BS0|1|A|A|2228
9BS0|1|A|C|2229
9BS0|1|A|C|2230
*
9BS0|1|A|G|2251
9BS0|1|A|A|2252
9BS0|1|A|G|2253
9BS0|1|A|A|2254
9BS0|1|A|C|2255
9BS0|1|A|A|2256
9BS0|1|A|G|2257

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2