J3_9BSS_006

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_006 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.104

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9BSS|1|A|C|745
9BSS|1|A|A|746
9BSS|1|A|G|747
*
9BSS|1|A|C|779
9BSS|1|A|G|780
9BSS|1|A|A|781
9BSS|1|A|A|782
9BSS|1|A|C|783
*
9BSS|1|A|G|807
9BSS|1|A|A|808
9BSS|1|A|U|809
9BSS|1|A|G|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2