J3_9BSS_015

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUAG*CGCC*GGACG

Length

15 nucleotides

Bulged bases

9BSS|1|B|G|10, 9BSS|1|B|A|11, 9BSS|1|B|U|12, 9BSS|1|B|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BSS|1|B|C|9
9BSS|1|B|G|10
9BSS|1|B|A|11
9BSS|1|B|U|12
9BSS|1|B|A|13
9BSS|1|B|G|14
*
9BSS|1|B|C|66
9BSS|1|B|G|67
9BSS|1|B|C|68
9BSS|1|B|C|69
*
9BSS|1|B|G|103
9BSS|1|B|G|104
9BSS|1|B|A|105
9BSS|1|B|C|106
9BSS|1|B|G|107

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA