J3_9C8K_001

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

9C8K|1|1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|A|40
9C8K|1|1|G|41
*
9C8K|1|1|C|481
9C8K|1|1|G|482
9C8K|1|1|C|483
9C8K|1|1|A|484
9C8K|1|1|A|485
9C8K|1|1|A|486
9C8K|1|1|U|487
9C8K|1|1|U|488
9C8K|1|1|A|489
*
9C8K|1|1|U|511
9C8K|1|1|A|512
9C8K|1|1|G|513
9C8K|1|1|U|514

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain J

uS4

Chain X

uS12

Chain Y

Small ribosomal subunit protein eS24