J3_9C8K_006

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAGCCU*GCGCUAC*GGAA

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C8K|1|1|U|1225
9C8K|1|1|G|1226
9C8K|1|1|G|1227
9C8K|1|1|A|1228
9C8K|1|1|G|1229
9C8K|1|1|C|1230
9C8K|1|1|C|1231
9C8K|1|1|U|1232
*
9C8K|1|1|G|1526
9C8K|1|1|C|1527
9C8K|1|1|G|1528
9C8K|1|1|C|1529
9C8K|1|1|U|1530
9C8K|1|1|A|1531
9C8K|1|1|C|1532
*
9C8K|1|1|G|1638
9C8K|1|1|G|1639
9C8K|1|1|A|1640
9C8K|1|1|A|1641

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain S

uS13

Chain T

40S ribosomal protein eS19

Chain U

uS10