J3_9CG5_022

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9CG5|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG5_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0517

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9CG5|1|a|G|297
9CG5|1|a|G|298
9CG5|1|a|A|299
9CG5|1|a|A|300
9CG5|1|a|G|301
*
9CG5|1|a|C|316
9CG5|1|a|G|317
9CG5|1|a|C|318
9CG5|1|a|G|319
9CG5|1|a|A|320
9CG5|1|a|U|321
9CG5|1|a|A|322
9CG5|1|a|C|323
9CG5|1|a|A|324
9CG5|1|a|G|325
*
9CG5|1|a|C|337
9CG5|1|a|G|338
9CG5|1|a|U|339
9CG5|1|a|A|340
9CG5|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24