J3_9CG6_011

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9CG6|1|A|U|1212, 9CG6|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG6_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1303

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9CG6|1|A|C|990
9CG6|1|A|U|991
9CG6|1|A|U|992
9CG6|1|A|G|993
9CG6|1|A|A|994
9CG6|1|A|C|995
9CG6|1|A|A|996
9CG6|1|A|U|997
*
9CG6|1|A|A|1044
9CG6|1|A|C|1045
9CG6|1|A|A|1046
9CG6|1|A|G|1047
*
9CG6|1|A|C|1210
9CG6|1|A|U|1211
9CG6|1|A|U|1212
9CG6|1|A|A|1213
9CG6|1|A|C|1214
9CG6|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14