J3_9CG7_023

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9CG7|1|a|U|686, 9CG7|1|a|A|792, 9CG7|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG7_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0482

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9CG7|1|a|U|683
9CG7|1|a|G|684
9CG7|1|a|A|685
9CG7|1|a|U|686
9CG7|1|a|C|687
9CG7|1|a|U|688
9CG7|1|a|A|689
*
9CG7|1|a|U|773
9CG7|1|a|G|774
9CG7|1|a|G|775
*
9CG7|1|a|C|791
9CG7|1|a|A|792
9CG7|1|a|A|793
9CG7|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2