J3_9CG7_024

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG7_024 not in the Motif Atlas

Homologous match to J3_9DFE_008

Geometric discrepancy: 0.0572

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9CG7|1|a|C|698
9CG7|1|a|A|699
9CG7|1|a|G|700
*
9CG7|1|a|C|732
9CG7|1|a|G|733
9CG7|1|a|A|734
9CG7|1|a|A|735
9CG7|1|a|C|736
*
9CG7|1|a|G|760
9CG7|1|a|A|761
9CG7|1|a|U|762
9CG7|1|a|G|763

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2