J3_9D0G_062

3D structure

PDB id

9D0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0G_062 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.109

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

9D0G|1|2a|C|936
9D0G|1|2a|A|937
9D0G|1|2a|A|938
9D0G|1|2a|G|939
*
9D0G|1|2a|C|1344
9D0G|1|2a|U|1345
9D0G|1|2a|A|1346
9D0G|1|2a|G|1347
9D0G|1|2a|U|1348
9D0G|1|2a|A|1349
9D0G|1|2a|A|1350
*
9D0G|1|2a|U|1372
9D0G|1|2a|G|1373
9D0G|1|2a|A|1374
9D0G|1|2a|A|1375
9D0G|1|2a|U|1376
9D0G|1|2a|A|1377
9D0G|1|2a|C|1378
9D0G|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA