J3_9D0I_009

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

9D0I|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|1A|G|1055
9D0I|1|1A|G|1056
9D0I|1|1A|A|1057
9D0I|1|1A|G|1058
*
9D0I|1|1A|C|1080
9D0I|1|1A|U|1081
9D0I|1|1A|U|1082
9D0I|1|1A|U|1083
9D0I|1|1A|A|1084
9D0I|1|1A|A|1085
9D0I|1|1A|A|1086
9D0I|1|1A|G|1087
9D0I|1|1A|A|1088
9D0I|1|1A|G|1089
9D0I|1|1A|U|1090
9D0I|1|1A|G|1091
*
9D0I|1|1A|C|1100
9D0I|1|1A|U|1101
9D0I|1|1A|C|1102
9D0I|1|1A|A|1103
9D0I|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36