J3_9D0J_067

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

9D0J|1|2a|G|1026, 9D0J|1|2a|C|1037

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0J|1|2a|G|1002
9D0J|1|2a|G|1003
9D0J|1|2a|A|1004
9D0J|1|2a|A|1005
9D0J|1|2a|C|1006
*
9D0J|1|2a|G|1023
9D0J|1|2a|G|1024
9D0J|1|2a|U|1025
9D0J|1|2a|G|1026
9D0J|1|2a|C|1027
9D0J|1|2a|C|1028
*
9D0J|1|2a|G|1033
9D0J|1|2a|G|1034
9D0J|1|2a|A|1035
9D0J|1|2a|G|1036
9D0J|1|2a|C|1037
9D0J|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains