J3_9D7S_009

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAGG*CCUUUAAAG*CAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|1A|G|1055
9D7S|1|1A|G|1056
9D7S|1|1A|A|1057
9D7S|1|1A|G|1058
9D7S|1|1A|G|1059
*
9D7S|1|1A|C|1079
9D7S|1|1A|C|1080
9D7S|1|1A|U|1081
9D7S|1|1A|U|1082
9D7S|1|1A|U|1083
9D7S|1|1A|A|1084
9D7S|1|1A|A|1085
9D7S|1|1A|A|1086
9D7S|1|1A|G|1087
*
9D7S|1|1A|C|1102
9D7S|1|1A|A|1103
9D7S|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36