J3_9D7S_028
3D structure
- PDB id
- 9D7S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 9D7S|1|1a|A|975, 9D7S|1|1a|G|976, 9D7S|1|1a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D7S_028 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0755
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9D7S|1|1a|U|955
9D7S|1|1a|U|956
9D7S|1|1a|U|957
9D7S|1|1a|A|958
9D7S|1|1a|A|959
9D7S|1|1a|U|960
9D7S|1|1a|U|961
9D7S|1|1a|C|962
*
9D7S|1|1a|G|973
9D7S|1|1a|A|974
9D7S|1|1a|A|975
9D7S|1|1a|G|976
9D7S|1|1a|A|977
9D7S|1|1a|A|978
9D7S|1|1a|C|979
9D7S|1|1a|C|980
9D7S|1|1a|U|981
9D7S|1|1a|U|982
9D7S|1|1a|A|983
9D7S|1|1a|C|984
*
9D7S|1|1a|G|1221
9D7S|1|1a|G|1222
9D7S|1|1a|C|1223
9D7S|1|1a|G|1224
9D7S|1|1a|A|1225
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1s
- 30S ribosomal protein S19
- Chain 1w
- Peptide chain release factor 1
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