J3_9D7S_031

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

9D7S|1|1a|G|1026, 9D7S|1|1a|C|1037

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7S_031 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.5212

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|1a|G|1002
9D7S|1|1a|G|1003
9D7S|1|1a|A|1004
9D7S|1|1a|A|1005
9D7S|1|1a|C|1006
*
9D7S|1|1a|G|1023
9D7S|1|1a|G|1024
9D7S|1|1a|U|1025
9D7S|1|1a|G|1026
9D7S|1|1a|C|1027
9D7S|1|1a|C|1028
*
9D7S|1|1a|G|1033
9D7S|1|1a|G|1034
9D7S|1|1a|A|1035
9D7S|1|1a|G|1036
9D7S|1|1a|C|1037
9D7S|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains