J3_9D7S_057

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

9D7S|1|2a|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7S_057 not in the Motif Atlas

Geometric match to J3_1KUQ_001

Geometric discrepancy: 0.1177

The information below is about J3_1KUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9D7S|1|2a|C|586
9D7S|1|2a|G|587
9D7S|1|2a|G|588
*
9D7S|1|2a|C|651
9D7S|1|2a|U|652
9D7S|1|2a|A|653
9D7S|1|2a|G|654
*
9D7S|1|2a|C|754
9D7S|1|2a|G|755

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17