J3_9D7T_016
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 9D7T|1|1A|G|2334, 9D7T|1|1A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D7T_016 not in the Motif Atlas
- Homologous match to J3_9DFE_016
- Geometric discrepancy: 0.0613
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9D7T|1|1A|C|2295
9D7T|1|1A|U|2296
9D7T|1|1A|C|2297
*
9D7T|1|1A|G|2321
9D7T|1|1A|A|2322
9D7T|1|1A|G|2323
*
9D7T|1|1A|U|2332
9D7T|1|1A|A|2333
9D7T|1|1A|G|2334
9D7T|1|1A|A|2335
9D7T|1|1A|A|2336
9D7T|1|1A|G|2337
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
- Chain 1x
- Transfer RNA; tRNA
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