J3_9D7T_034
3D structure
- PDB id
- 9D7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D7T_034 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1508
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9D7T|1|1a|U|1073
9D7T|1|1a|G|1074
*
9D7T|1|1a|U|1083
9D7T|1|1a|G|1084
9D7T|1|1a|U|1085
9D7T|1|1a|U|1086
9D7T|1|1a|G|1087
*
9D7T|1|1a|C|1098
9D7T|1|1a|G|1099
9D7T|1|1a|C|1100
9D7T|1|1a|A|1101
9D7T|1|1a|A|1102
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1e
- 30S ribosomal protein S5
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