J3_9DFC_009

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFC|1|1A|G|1055
9DFC|1|1A|G|1056
9DFC|1|1A|A|1057
9DFC|1|1A|G|1058
*
9DFC|1|1A|C|1080
9DFC|1|1A|U|1081
9DFC|1|1A|U|1082
9DFC|1|1A|U|1083
9DFC|1|1A|A|1084
9DFC|1|1A|A|1085
9DFC|1|1A|A|1086
9DFC|1|1A|G|1087
*
9DFC|1|1A|C|1102
9DFC|1|1A|A|1103
9DFC|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36