J3_9DFC_036
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 9DFC|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFC_036 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1187
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9DFC|1|1a|C|1116
9DFC|1|1a|G|1117
9DFC|1|1a|C|1118
*
9DFC|1|1a|G|1155
9DFC|1|1a|G|1156
9DFC|1|1a|A|1157
9DFC|1|1a|C|1158
9DFC|1|1a|U|1159
9DFC|1|1a|G|1160
9DFC|1|1a|C|1161
*
9DFC|1|1a|G|1175
9DFC|1|1a|A|1176
9DFC|1|1a|G|1177
9DFC|1|1a|G|1178
9DFC|1|1a|A|1179
9DFC|1|1a|A|1180
9DFC|1|1a|G|1181
9DFC|1|1a|G|1182
9DFC|1|1a|A|1183
9DFC|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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