J3_9DFD_018
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 9DFD|1|1A|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFD_018 not in the Motif Atlas
- Homologous match to J3_9DFE_018
- Geometric discrepancy: 0.1547
- The information below is about J3_9DFE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24127.1
- Basepair signature
- cWW-F-cWW-tWH-F-F-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9DFD|1|1A|C|2789
9DFD|1|1A|A|2790
9DFD|1|1A|C|2791
*
9DFD|1|1A|G|2805
9DFD|1|1A|G|2807
9DFD|1|1A|U|2808
9DFD|1|1A|A|2809
9DFD|1|1A|A|2810
9DFD|1|1A|G|2811
*
9DFD|1|1A|C|2889
9DFD|1|1A|G|2891
9DFD|1|1A|A|2892
9DFD|1|1A|G|2893
9DFD|1|1A|G|2894
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1W
- 50S ribosomal protein L22
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