J3_9DFD_064
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 9DFD|1|2a|A|975, 9DFD|1|2a|G|976, 9DFD|1|2a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFD_064 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0613
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9DFD|1|2a|U|955
9DFD|1|2a|U|956
9DFD|1|2a|U|957
9DFD|1|2a|A|958
9DFD|1|2a|A|959
9DFD|1|2a|U|960
9DFD|1|2a|U|961
9DFD|1|2a|C|962
*
9DFD|1|2a|G|973
9DFD|1|2a|A|974
9DFD|1|2a|A|975
9DFD|1|2a|G|976
9DFD|1|2a|A|977
9DFD|1|2a|A|978
9DFD|1|2a|C|979
9DFD|1|2a|C|980
9DFD|1|2a|U|981
9DFD|1|2a|U|982
9DFD|1|2a|A|983
9DFD|1|2a|C|984
*
9DFD|1|2a|G|1221
9DFD|1|2a|G|1222
9DFD|1|2a|C|1223
9DFD|1|2a|G|1224
9DFD|1|2a|A|1225
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2j
- 30S ribosomal protein S10
- Chain 2m
- 30S ribosomal protein S13
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2s
- 30S ribosomal protein S19
- Chain 2w
- Transfer RNA; tRNA
- Chain 2z
- Lasso peptide lariocidin B
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