J3_9DIB_001
3D structure
- PDB id
- 9DIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rous sarcoma virus frameshifting pseudoknot RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.68 Å
Loop
- Sequence
- UGUUGCGCUACAUC*GAC*GA
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DIB_001 not in the Motif Atlas
- Geometric match to J3_9DID_001
- Geometric discrepancy: 0.0309
- The information below is about J3_9DID_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21426.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9DIB|1|B|U|17
9DIB|1|B|G|18
9DIB|1|B|U|19
9DIB|1|B|U|20
9DIB|1|B|G|21
9DIB|1|B|C|22
9DIB|1|B|G|23
9DIB|1|B|C|24
9DIB|1|B|U|25
9DIB|1|B|A|26
9DIB|1|B|C|27
9DIB|1|B|A|28
9DIB|1|B|U|29
9DIB|1|B|C|30
*
9DIB|1|B|G|54
9DIB|1|B|A|55
9DIB|1|B|C|56
*
9DIB|1|B|G|71
9DIB|1|B|A|72
Current chains
- Chain B
- frameshifting pseudoknot RNA
Nearby chains
- Chain A
- frameshifting pseudoknot RNA
Coloring options: