J3_9DP7_004
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9DP7|1|A1|U|343, 9DP7|1|A1|A|351, 9DP7|1|A4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|C|340
9DP7|1|A1|G|341
9DP7|1|A1|A|342
9DP7|1|A1|U|343
9DP7|1|A1|A|344
9DP7|1|A1|G|345
9DP7|1|A1|C|346
9DP7|1|A1|G|347
9DP7|1|A1|A|348
9DP7|1|A1|A|349
9DP7|1|A1|C|350
9DP7|1|A1|A|351
9DP7|1|A1|A|352
9DP7|1|A1|G|353
9DP7|1|A1|U|354
9DP7|1|A1|A|355
9DP7|1|A1|C|356
*
9DP7|1|A1|G|363
9DP7|1|A1|G|364
9DP7|1|A1|A|365
9DP7|1|A1|A|366
9DP7|1|A1|A|367
9DP7|1|A1|G|368
*
9DP7|1|A4|C|21
9DP7|1|A4|U|22
9DP7|1|A4|U|23
9DP7|1|A4|G|24
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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