J3_9DP7_006
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9DP7|1|A1|A|398, 9DP7|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|A|369
9DP7|1|A1|U|370
9DP7|1|A1|G|371
9DP7|1|A1|A|372
9DP7|1|A1|A|373
9DP7|1|A1|A|374
9DP7|1|A1|A|375
9DP7|1|A1|G|376
9DP7|1|A1|A|377
9DP7|1|A1|A|378
9DP7|1|A1|C|379
*
9DP7|1|A1|G|390
9DP7|1|A1|A|391
9DP7|1|A1|G|392
9DP7|1|A1|U|393
9DP7|1|A1|G|394
9DP7|1|A1|A|395
9DP7|1|A1|A|396
9DP7|1|A1|A|397
9DP7|1|A1|A|398
9DP7|1|A1|A|399
9DP7|1|A1|G|400
9DP7|1|A1|U|401
9DP7|1|A1|A|402
9DP7|1|A1|C|403
9DP7|1|A1|G|404
*
9DP7|1|A4|C|19
9DP7|1|A4|U|20
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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