J3_9DP7_010

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

9DP7|1|A1|A|1065, 9DP7|1|A1|U|1094, 9DP7|1|A1|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|U|986
9DP7|1|A1|U|987
*
9DP7|1|A1|A|1062
9DP7|1|A1|G|1063
9DP7|1|A1|A|1064
9DP7|1|A1|A|1065
9DP7|1|A1|G|1066
*
9DP7|1|A1|C|1092
9DP7|1|A1|A|1093
9DP7|1|A1|U|1094
9DP7|1|A1|U|1095
9DP7|1|A1|U|1096
9DP7|1|A1|G|1097
9DP7|1|A1|A|1098

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29