J3_9DP7_029

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

9DP7|1|B5|U|227, 9DP7|1|B5|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|A|213
9DP7|1|B5|G|214
9DP7|1|B5|A|215
9DP7|1|B5|U|216
9DP7|1|B5|A|217
9DP7|1|B5|A|218
9DP7|1|B5|A|219
9DP7|1|B5|A|220
9DP7|1|B5|A|221
9DP7|1|B5|A|222
9DP7|1|B5|U|223
9DP7|1|B5|C|224
9DP7|1|B5|A|225
9DP7|1|B5|A|226
9DP7|1|B5|U|227
9DP7|1|B5|G|228
*
9DP7|1|B5|C|237
9DP7|1|B5|U|238
9DP7|1|B5|C|239
9DP7|1|B5|U|240
9DP7|1|B5|U|241
9DP7|1|B5|U|242
9DP7|1|B5|G|243
*
9DP7|1|B5|C|250
9DP7|1|B5|A|251
9DP7|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A